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The Androgen Receptor (AR) is one of the most validated therapeutic targets in Prostate Cancer (PCa). Conventional antiandrogens
lose effectiveness as cancer therapeutics because anti-androgen resistance usually develops after long term treatment.
The challenge is that the current therapeutics should bind to the same site of the AR (hormone binding pocket) and act via the
same mode, to which the receptor has already developed effective resistance mechanisms. Hence, there is a pressing need for novel
therapeutics that inhibit the AR through novel, alternative modes of action. Recent studies have identified a novel binding pocket
on the surface of AR called Binding Function 3 (BF3) that is important for the AR transcriptional activity. In order to identify
compounds that specifically bind to BF3 site and inhibit the AR, we conducted a systematic in silico screen (that included large-scale
docking, in-site rescoring, and consensus voting procedures) followed by experimental validation of the identified hit molecules. As a
result, we have discovered a novel chemical series of indoles as lead BF3 inhibitors. One of the most potent inhibitors identified, VPC-
13566, demonstrated an IC50 of 0.20 uM in AR eGFP transcriptional assay. Confirming it as a true BF3 binder, VPC-13566 neither
displaced the co-activator from an alternative co-activator binding site, activation function 2 site, nor androgen from the hormone
binding pocket. Additionally, the Biolayer Interferometry assay detected direct reversible interactions between the AR ligand binding
domain and the inhibitor. VPC-13163 demonstrated strong anti-proliferative activity against LNCaP and Enzalutamide-resistant
prostate cancer cell lines (MR49F) whereas it did not affect the growth of AR independent PC3 cell line. It also inhibits Prostate
Specific Antigen (PSA) in both LNCaP and MR49F and reduces expression of AR target genes, PSA and TMPRSS2. These findings
suggest that VPC-13566 exhibits AR BF3 specific mechanism of action. Furthermore, VPC-13566 reduces AR-dependent growth
of xenograft tumors in vivo. Based on these outcomes, it can be anticipated that such drug prototypes will lay a foundation for the
development of alternative or supplementary small-molecule therapies capable of combating PCa even in its drug resistant forms.
Because the emergence of castration resistance is the lethal end stage of the disease, we anticipate that the proposed research will
eventually have a substantial impact on patient survival.