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Crohn�s disease (CD) and ulcerative colitis are inflammatory conditions, collectively referred to as inflammatory bowel
disease (IBD), which results from defects in the regulation of mucosal immune responses to enteric bacteria in genetically
susceptible individuals. Multiple lines of evidence suggest a genetic contribution to the pathogenesis of IBD, which include
racial and ethnic differences in disease prevalence, familial aggregation and link to other genetic syndromes. Recent genomewide
association studies (GWAS) have identified >200 genetic variants associated with IBD risk, some of which have functions
in biological pathways of pathogen recognition, internalization and autophagy. However, GWAS-identified loci have explained
less than a quarter of the heritability estimated for IBD and many are confined to noncoding regions, requiring further studies
to understand their role in disease pathogenesis. Recently, next generation sequencing efforts, most successful in isolated
populations and individuals with early age of onset and/or significant family history of IBD, identified rare coding variants
associated with IBD risk that are more amenable to functional studies than GWAS loci. Also, a number of genetic variants
have been linked to adverse events resulting from IBD therapies, particularly thiopurine exposure, including bone marrow
toxicity and pancreatitis. Yet, despite substantial progress in the field of genetics and genomics of IBD, reliable tools to identify
individuals at risk, determine disease progression and predict response to therapies are still lacking. More comprehensive
approaches that incorporate clinical, genetic, epigenetic, metabolomic, and microbiome data need to be developed to allow for
an early diagnosis and personalized treatment for IBD.