DataBiNS-Viz: A Web-Based Tool for Visualization of Non-Synonymous SNP Data |
| Fong Chun Chan1, Edward A. Kawas1, Mark D. Wilkinson1,2, Scott J. Tebbutt1,3* |
| 1The James Hogg iCAPTURE Centre for Cardiovascular and Pulmonary Research |
| 2Department of Medical Genetics |
3Department of Medicine, Division of Respiratory Medicine; University of British Columbia, Providence
Heart + Lung Institute, St. Paul’s Hospital, Vancouver, BC, V6Z 1Y6, Canada |
| *Corresponding author: |
Dr. Scott J. Tebbutt, The James Hogg iCAPTURE Centre for
Cardiovascular and Pulmonary Research,
Phone: 604-682-2344 ext. 63051,
Fax: 604-806-9274,
E-mail: stebbutt@mrl.ubc.ca |
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| Received June 26, 2008; Accepted July 16, 2008; Published July 17, 2008 |
| Citation: Fong CC, Edward AK, Mark DW, Scott JT (2008) DataBiNS-Viz: A Web-Based Tool for Visualization of Non-
Synonymous SNP Data. J Proteomics Bioinform 1: 233-236. doi:10.4172/jpb.1000029 |
| Copyright: © 2008 Fong CC, etal. This is an open-access article distributed under the terms of the Creative Commons
Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original
author and source are credited. |
| Abstract |
Here we describe DataBiNS-Viz – a visualization and exploration environment for non-synonymous coding
single nucleotide polymorphisms (nsSNPs) data gathered by the BioMoby-based DataBiNS workflow. DataBiNSViz
enables execution of the DataBiNS workflow on proteins described by KEGG, PubMed, or OMIM identifiers,
followed by manual exploration of the integrated structure/function and pathway data for those proteins, with
a particular focus on nsSNP data in-context. The tool can be freely accessed at http://bioinfo.icapture.ubc.ca:8090/DataBiNS (please use the Firefox or Safari web browsers). Examples of the retrieved data are given under the “Help on inputs” option. Detailed documentation can be accessed at: http://bioinfo.icapture.ubc.ca/mywiki/DataBiNS. |
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