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Citation: Amit N, OP Jangir, PS Solanki, Vijay S, M Krishnamohan (2008) In Silico and In Vivo Study of Lens Regeneration Under the Influence of Retinoid. J Proteomics Bioinform 1: 104-108.
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Copyright: © 2008 Amit N, etal. This is an open-access article distributed under the terms of the Creative Commons Attribution
License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and
source are credited.
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Abstract
The present study supports previous finding that vitamin A can induce and accelerate lens regeneration in pigmented epithelial cells
(PECs) of dorsal iris not only in amphibians but also in young and adult swiss albino mice, guinea pig, rabbit and pigs. In lens
regeneration, several workers have shown that vitamin A possesses the mitogenic activity which causes functional impairment of
retinoid receptors and thereby inhibits the lens regeneration. The purpose of present study is to know how retinoids and their derivatives
interact with Retinoid X receptor (Rxr alpha) and thus helping in lens regeneration. The docking studies of human and mice Rxr alpha
were performed against vitamin A and 9-cis retinoic acid (vitamin A1) using autodock and the results were analyzed using Discovery
Studio from Accelrys. The results show that there is a significant similarity in interaction energy of Rxr alpha of mice and human. The
highest rank docked energy of Rxr alpha mice with vitamin A was -11.65 kcal, which was much closed to -11.83 kcal of 9-cis retinoic acid.
Similarly, in human Rxr alpha receptor, the highest docked energy showed the significant similarity with vitamin A (-12.19 kcal) and 9-
cis retinoic acid (-12.14 kcal). This study suggests that vitamin A shows effect on proliferation and differentiation similar to the 9-cis
retinoic acid and also proves that vitamin A acts on Retinoid X alpha receptors and enhance lens regeneration in mammals.
Keywords
Docking; Vitamin A; 9-cis retinoic acid; Rxr alpha receptor; Lens regeneration
Introduction
Lens regeneration provides a clear example of trans-differentiation
of one differentiated cellular type having a distinctive pattern
of metabolic activities to another cellular type, which is morphologically
and biochemically distinct from the original. An abundant
literature exists on lens regeneration in amphibians (Reyer,
1971, 1990; Stone 1959; Yamada, 1967; Jangir et al, 1995). Lens
regeneration from non ocular tissue (dorsal iris) has been well
documented in amphibians (Reyer, 1954, 1977; Eguchi and Itoh,
1982; Eguchi, 1988). However, the capability of iris and retinal
pigmented epithelial cells (PECs) to trans-differentiate into lens In
vitro is not restricted to urodeles only but is widely conserved in
almost all vertebrates, including mammals. Although good lens
regeneration from PECs in vivo has been seen in a few species of
fishes and urodele amphibians. In cell culture, PECs of almost all
vertebrates can switch differentiation to acquire the characteristics
of lens (Eguchi 1997; Okada 2000). The role of retinoic acid in
embryonic and post embryonic development has also been described.
(Maden M, 2000). It has been found that expression and
role of retinoic acid receptor alpha was very important in lens
regeneration (Tsonis et al, 2002). Retinoid (vitamin A) are crucial
for most forms of life. They have important roles in the developing
nervous system and notochord and many other embryonic
structures, as well as in maintenance of epithelial surfaces, immune
competence, and reproduction. The ability of all-trans
retinoic acid to regulate expression of several hundred genes
through binding to nuclear transcription factors is believed to
mediate most of these functions. (Rune Blomhoff, 2006) Experimentally, regenerative ability can be activated by using certain
chemical likes vitamin A and 3-nitrobenzothiazolo (3, 2-a)
quinolinium chloride (NBQ).Scientists has inferred that vitamin A
and its derivatives were found to accelerate lens regeneration not
only in amphibian frogs but also in mammals like swiss albino
mice, rabbit, guinea pigs and pigs (Shekhawat et al, 2001).It has
been reported that vitamin A (Retinol) is the immediate precursor
to two important active metabolites: Retinal (that is important for
vision) and Retinoic acid (which serves as an intracellular messenger
that affects transcription of number of genes). Exogenous
application of retinoic acid can regulate in a specific manner in the
expression of number of homeobox genes implicated in lens regeneration
(Maden, 1993). Retinoic acid is lipophilic signaling molecule that is synthesized from ubiquitous non-signaling precursor
retinol and functions by activating nuclear receptor that
are ligand dependent transcription factors present in responsive
cells. The level of retinoic acid in a cell is regulated by cytoplasmic
retinoic acid binding protein that may function in intracellular
buffers. It has been reported that at molecular level the retinoic
acid receptors are members of super family of intracellular hormone
receptor which functions as regulator of gene transcription.
These receptors comprise two distinct families, the retinoic acid
receptor (RAR) family and the Retinoid X receptor (RXR) family;
both families have subfamilies which have alpha, beta and gamma
receptor proteins (Ralff C. J. Ribeiro, 1995). The Retinoid X alpha
receptors are nuclear receptors that mediate the biological effects
of retinoid by their involvement in retinoic acid-mediated gene
activation.
These receptors exert their action by binding, as homodimers or
heterodimers, to specific sequences in the promoters of target
genes and regulating their transcription (S. Khan et al, 2003). In
our previous finding (Shekawat DS et al, 2001), it has been reported
that vitamin A causes induction and acceleration of lens
regeneration in young and adult mice. Vitamin A metabolite 9-cis
retinoic acid present endogenously and works as an antagonist
(Calberg et al, 1993). These known properties of Rxr alpha, 9-cis
retinoic acid and vitamin A motivated the present work to explore
the influence of vitamin A on lens regeneration in young and
adult mice. Recent methodologies like In silico docking and simulation
studies were considered beneficial for this research as it
provides the result with more accuracy in relatively very less time.
Material and Method
For the present experimental study swiss albino mice were employed.
The experiments were carried out on newly born young
mice (10 day old) and sexually matured adult mice (60 day).
Lensectomy was carried out on 80 animals under local anesthesia
(2% xylocaine). A longitudinal slit was made in the cornea of the
right eye under a stereoscopic binocular microscope. The complete
intact lens along with lens capsule was extracted through
the incision. Following the operation, 30 IU/ml solution (young
mice) and 50 IU/ml solution (adult mice) of vitamin A was injected
intra peritoneal (I.P) on alternate days. In the case of 40 operated the animals of the control group were given Sham injections. The
eyes were sectioned and stained with haemotoxylin and counter
stained with eosin. Routine steps in the above process were followed
according to Humason (1972). The experiments were terminated
on day 40 after the operation.
For the present computational study, the protein structures of Rxr
alpha receptor of human (PDB id, 1fby) and mice (PDB id, 1mv9)
were obtained from Protein Data Bank. Four docking studies were
performed. The Rxr alpha receptor of mice (1mv9) and human
(1FBY) were docked with vitamin A and 9-cis retinoic acid. Discovery
Studio Package from Accelrys (2.0) and AutoDock 4 from
Scripps Research Institute were used for computational analysis
and docking studies.
Initially, Discovery Studio Package was used to generate H-bonds
on ligand and receptor. The CVFF91 forcefield were applied. In
order to create dlg files for docking studies in AutoDock, solvation
and grid parameters were applied.
Result and Analysis
In vivo studies elucidate all the experimental process. First of all
swiss albino mice were treated with vitamin A. In young albino
mice 90% and in adult albino mice 80% regeneration was observed.
The docking of Retinoid X receptor alpha of human and mice with
vitamin A and 9-cis retinoic acid were performed in silico. Looking
into the similarities between docking results of Rxr alpha receptor
of Human (1FBY) and Mice (1MV9), it can be inferred that vitamin
A may accelerate lens regeneration in human also. However the
percentage of lens regeneration in young and adult operated mice
of control group was found low. It was 20% in young mice and
only 2% in adult mice.
Histological study revealed that during lens regeneration after lensectomy the two layers of pigmented epithelium of the dorsal iris began to thicken and a cleft develops between two lamina of the dorsal iris (Figure 5 and 6) and the nuclei of iris cells changed their shape. Then the pupillary margin of the iris becomes knob-like. The formation of this knob-like structure continued until the free margin became a swollen loop-like structure. Scattered mitotic figures were also observed. All these changes continue up to day 7 after operation in vitamin A treated animals. Then the cells started to dedifferentiate: they threw out their melanosomes. These melanosomes are ingested by macrophages that entered from the wounded site. Dorsal iris cells continued to divide, forming a vesicle-like structure in the region of the removed lens (Figure 7).
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Figure 5: Swiss albino mice: Microphotograph of L.S
through Eye: section showing cleft and DI = Dorsal
iris (× 200 )
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Figure 6: Swiss albino mice: Microphotograph of L.S
through Eye: section showing lens fiber Dorsal Iris,
capsule LFC= Lens formingcell (× 200 )
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Figure 7: Swiss albino mice: Microphotograph of L.S
through Eye: section showing lens vesicle = lens
vesicle(× 200 )
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Now the vesicle differentiated into a new lens. Once the new lens formed, the cells of the dorsal iris ceased mitosis.
The newly formed lens was surrounded by a lens epithelium whose cells were cubiodal and slightly taller than before. In addition lens fiber formation was initiated in the inner surface of the vesicular lens. Cells began to elongate and entered the lumen of the vesicle. Gradually the lumen was filled by primary lens fiber nuclei (Figure 8) before the secondary lens fibers began to form. Later on the secondary lens fibers began to differentiate and grow around the central nucleus and the regenerated lens became a better-defined structure (Figure 9 and 10). In the next stage the lens detached from the dorsal iris and returned to its normal status.
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Figure 8: Swiss albino mice: Microphotograph of L.S
through Eye: section showing DI = Dorsal LV Iris,
PLF = Primary Lens Fiber (× 200 )
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Figure 9: Micro photographic section passing through
Eye of vitamin A treated Swiss albino mice: showing
regenerated lens (× 400 )
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Figure 10: Normal looking right eye of operated
vitaminA treated younganimalwith regenerated lens
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In silico studies explain all computational process. After successful
docking, the resulted dlg files were analyzed which contain top ten ranked conformers with their respective docked energies.
The docked structure with all top ranked conformers was visualized
in Discovery Studio. The docking energy for IMV9 with
vitamin A ranges between -11.65 kcal and -6.88 kcal and for 9-cis retinoic acid it ranges between -11.83 cal and -6.55 kcal. Similarly
for 1FBY the docking energy for vitamin A was between -12.19
kcal and -7.30 and for 9-cis retinoic acid it was between -12.14 kcal and -4.10 kcal. The result showed that the docking energies of
highest ranked conformer for Rxr alpha receptor of human with
vitamin A and 9-cis retinoic acid were very close and similar was in
case of mice. The structural and docked energy similarity of both
receptors gives clear evidence why exogenous vitamin A proved
beneficial for lens regeneration. The results of docking studies
are mentioned in Table 2,3,4,5 and Figure 1,2,3,4 respectively.
Table 1: Percentage of lens regeneration in young and
adult mice of control and vitamin A treated groups
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Table 2: 1MV9 Interaction
with vitamin A
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Table 3: 1MV9 Interaction
with 9-cis retinoic acid
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Table 4: 9-cis Retinoic acid
Interaction with 1fby
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Table 5: vitamin A Interaction
with1fby
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Figure 1: 9- cis retinoic acid with 1MV9
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Figure 2: 9- cis retinoic acid with 1FBY
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Figure 3: vitamin A with Retinoic x receptor alpha
1 Mv9 with hydrogen atoms a closed pics ball and
stick = vitamin A, yellow line= Hydrogen bond,
software cerius2
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Figure 4: vitamin A with 1FBY
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Discussion
The main finding of this study is that mice have the capacity to
regenerate an eye lens at early stages of development and this
ability can be significantly enhanced by vitamin A treatment. The
Retinoic acid receptors are super family of inter cellular hormone
receptor. These receptors comprise two distinct families, the RARs
and the RXRs. Both families have three subfamilies Rxr alpha, Rxr
beta and Rxr gamma (Ralff C. J. Ribeiro, 1995). Retinoid X alpha
receptor is a nuclear receptor that mediates the biological effects
of retinoid by involving in retinoic acid-mediated gene activation.
These receptors exert their action by binding, as homodimers or heterodimers, to specific sequences in the promoters of target
genes and regulating their transcription (S.Khan et al, 2003). The
9-cis retinoic acid also reported to be found endogenously and
work as an antagonist (C.Calberg et al, 1993). Retinoid X alpha
receptor was found in outer neuroblastic layer (ONBL); retinal
pigment epithelium (RPE); periocular mesenchyme (PM), lens,
cornea and iris of prenatal mouse (Mikiro Mori et al, 2001). This
strongly proved the presence of Rxr alpha receptor in dorsal iris
epithelium of mouse. Retinoic acid and Retinoid X receptor can
induce the accumulation of B-crystalline in N/N1003A lens cells
(Rashmi, Gopal ,Srivastava, 1998).
The in silico study of 9-cis retinoic acid and vitamin A were performed
using Discovery Studio and Autodock tool. From the results
it can be inferred that vitamin A shows effect on dedifferentiation,
proliferation and differentiation similar to 9-cis retinoic
acid. The docking results show that there is a significant similarity
between the interaction energies of both the compound against
Rxr alpha receptor. The 9-cis retinoic acid is a natural ligand of Rxr
alpha receptor and has highest affinity towards this receptor.
It has been reported that vitamin A doses enhance 9-cis retinoic
acid concentration in the plasma of preruminant calves (Brian J.
Nonnecke1 et al, 2000) can prove this theory that vitamin A can
convert to its derivative 9-cis retinoic acid
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(9-cis retinoic acid) |
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(Vitamin A) (Structure similarities of 9-cis retinoic acid and vitamin A) |
The obtained results support the hypothesis that lens regeneration
might be possible in human as the 1FBY, Rxr alpha human,
was found to be interacted exactly in similar way as 1MV9, Rxr
alpha mice. The structural and functional similarities between 9-
cis retinoic acid and vitamin A make these molecules to be used as
alternatively (Gaemers, 1998) and the 9-cis retinoic acid effecting
proliferation, differentiation and expression on Rxr alpha using
HL-60 cell (M Kizaki et al, 1993). Another mechanism of vitamin A
action reported that it may modulate the expression of RC3 mRNA
by affecting RAR-alpha, RAR-beta and RXR-beta receptors (Mao
CT zhao et al, 1993). It has been found that expression and role of
retinoic acid receptor alpha was very important in lens regeneration
(Tsonis et al,2002) and the role of retinoic acid in embryonic
and post embryonic development was described (Maden M, 2000). It has been reported that exogenous application of retinoic acid
can regulate in a specific manner the expression of a number of
homeobox genes implicated in pattern generation (Mohanty-
Hejmadi et al,1992; Maden, 1993).
Another pathway of RA action might be through the influence on
fibroblast growth factor (FGF). Recently it has been shown that
FGF can initiate cell cycle events and cell division in the dorsal iris
cells which are the basis for lens regeneration (McDevit et al,
1997). Recently it has been shown that following lensectomy,
FGFR-1 is specifically present in the differentiating pigment epithelial
cells of the dorsal iris and absent from the ventral iris. This
may be the reason for lens regeneration from the dorsal iris (Tsonis et al, 2000) and has identified similar signatures of gene expression
in dorsal and ventral with several cases of even higher levels
in the ventral iris (Makarev et al, 2008). In the present study, vitamin
A enhanced lens regenerative ability in young and in adult
mice (90% in treated young mice in comparison to 20% in controls
of the same age; no lens regeneration occurred in the adults of
control group, while it was in 80% cases of adult treated animals).
There is good evidence that vitamin A promotes and increases
dedifferentiation in regenerating systems (Maden, 1993; Niazi,
1996). The Retinoids are thus group of chemicals that can be
employed for investigations of the molecular mechanisms responsible
for homeotic transformation. Thus from the present in vivo
and in silico findings it can be concluded that vitamin A accelerating
lens regeneration in mice.
Acknowledgement
We are thankful to BTIS Centre funded by Department of Biotechnology,
Government of India for providing infrastructure facilities
at BISR. Also, thankful to Developmental Biology Lab,
Dunger College, Bikaner for the experimental support
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